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Clustering by antigen-presenting genes reveals immune landscapes and predicts response to checkpoint immunotherapy
Publication Type: Academic Journal
Source(s): Scientific Reports, Vol 13, Iss 1, Pp 1-12 (2023)
Abstract: Abstract Immune checkpoint blockade (ICB) has demonstrated efficacy by reinvigorating immune cytotoxicity against tumors. However, the mechanisms underlying how ICB induces responses in a subset of patients remain unclear. Using bulk and single-cell tr...
Sex-specific differences in immunogenomic features of response to immune checkpoint blockade
Publication Type: Academic Journal
Source(s): Frontiers in Oncology, Vol 12 (2022)
Abstract: IntroductionThe magnitude of response to immune checkpoint inhibitor (ICI) therapy may be sex-dependent, as females have lower response rates and decreased survival after ICI monotherapy. The mechanisms underlying this sex dimorphism in ICI response ar...
Clustering by antigen-presenting genes reveals immune landscapes and predicts response to checkpoint immunotherapy.
Publication Type: Academic Journal
Source(s): Scientific Reports; 1/18/2023, Vol. 13 Issue 1, p1-12, 12p
Abstract: Copyright of Scientific Reports is the property of Springer Nature and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or ...
Genomic characterization of malignant progression in neoplastic pancreatic cysts
Publication Type: Academic Journal
Source(s): Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Abstract: Neoplastic pancreatic cysts are associated with invasive pancreatic cancer, but their origins and evolutionary relationships are unclear. Here, the authors present the evolutionary analysis of neoplastic cysts and report them as precursors of invasive ...
Persistent mutation burden drives sustained anti-tumor immune responses
Publication Type: Periodical
Source(s): Nature Medicine; 20230101, Issue: Preprints p1-10, 10p
Abstract: Tumor mutation burden is an imperfect proxy of tumor foreignness and has therefore failed to consistently demonstrate clinical utility in predicting responses in the context of immunotherapy. We evaluated mutations in regions of the genome that are unl...
Characterization of genetic subclonal evolution in pancreatic cancer mouse models
Publication Type: Academic Journal
Source(s): Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019)
Abstract: In pancreatic cancer the Kras and Trp53 transgene driven KPC mouse model is used to experimentally study disease processes. Here, the authors analyse tumour evolution within the KPC model, finding both linear and branched evolution and highlighting the...
Experimental and In Silico Analysis of TEM β‑Lactamase Adaptive Evolution.
Publication Type: Academic Journal
Source(s): ACS Infectious Diseases; 12/9/2022, Vol. 8 Issue 12, p2451-2463, 13p
Sex-specific differences in immunogenomic features of response to immune checkpoint blockade.
Publication Type: Academic Journal
Source(s): Frontiers in Oncology; 8/3/2022, Vol. 12, p1-12, 12p
Abstract: Copyright of Frontiers in Oncology is the property of Frontiers Media S.A. and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, downl...
Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors.
Publication Type: Academic Journal
Source(s): Bioinformatics; Aug2022, Vol. 38 Issue 15, p3677-3683, 7p
Abstract: Copyright of Bioinformatics is the property of Oxford University Press / USA and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, dow...
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
Publication Type: Academic Journal
Source(s): Genome Medicine, Vol 9, Iss 1, Pp 1-10 (2017)
Abstract: Abstract The translation of personal genomics to precision medicine depends on the accurate interpretation of the multitude of genetic variants observed for each individual. However, even when genetic variants are predicted to modify a protein, their f...