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Does multi-way, long-range chromatin contact data advance 3D genome reconstruction?
Publication Type: Academic Journal
Source(s): BMC Bioinformatics, Vol 24, Iss 1, Pp 1-13 (2023)
Abstract: Abstract Background Methods for inferring the three-dimensional (3D) configuration of chromatin from conformation capture assays that provide strictly pairwise interactions, notably Hi-C, utilize the attendant contact matrix as input. More recent assay...
Angiogenesis precedes myogenesis during regeneration following biopsy injury of skeletal muscle
Publication Type: Academic Journal
Source(s): Skeletal Muscle, Vol 13, Iss 1, Pp 1-12 (2023)
Abstract: Abstract Background Acute injury to skeletal muscle damages myofibers and fragment capillaries, impairing contractile function and local perfusion. Myofibers and microvessels regenerate from satellite cells and from surviving microvessel fragments, res...
Pleural fluid microbiota as a biomarker for malignancy and prognosis
Publication Type: Academic Journal
Source(s): Scientific Reports, Vol 13, Iss 1, Pp 1-11 (2023)
Abstract: Abstract Malignant pleural effusions (MPE) complicate malignancies and portend worse outcomes. MPE is comprised of various components, including immune cells, cancer cells, and cell-free DNA/RNA. There have been investigations into using these componen...
Early Introduction and Community Transmission of SARS-CoV-2 Omicron Variant, New York, New York, USA
Publication Type: Academic Journal
Source(s): Emerging Infectious Diseases, Vol 29, Iss 2, Pp 371-380 (2023)
Abstract: The Omicron variant of SARS-CoV-2 has become dominant in most countries and has raised significant global health concerns. As a global commerce center, New York, New York, USA, constantly faces the risk for multiple variant introductions of SARS-CoV-2....
A candidate transporter allowing symbiotic dinoflagellates to feed their coral hosts
Publication Type: Academic Journal
Source(s): ISME Communications, Vol 3, Iss 1, Pp 1-7 (2023)
Abstract: Abstract The symbiotic partnership between corals and dinoflagellate algae is crucial to coral reefs. Corals provide their algal symbionts with shelter, carbon dioxide and nitrogen. In exchange, the symbiotic algae supply their animal hosts with fixed ...
Relation of gait measures with mild unilateral knee pain during walking using machine learning
Publication Type: Academic Journal
Source(s): Scientific Reports, Vol 12, Iss 1, Pp 1-9 (2022)
Abstract: Abstract Gait alterations in those with mild unilateral knee pain during walking may provide clues to modifiable alterations that affect progression of knee pain and osteoarthritis (OA). To examine this, we applied machine learning (ML) approaches to g...
The Syrian regime’s apparatus for systemic torture: A qualitative narrative study of testimonies from survivors
Publication Type: Academic Journal
Source(s): BMC Psychiatry, Vol 22, Iss 1, Pp 1-19 (2022)
Abstract: Abstract Background Despite broad interest of the Syrian refugee plight in the academic and media circles, there are still limited studies analyzing the lived experiences of torture survivors under the Syrian regime. This qualitative study interviewed ...
Internal Hemipelvectomy for primary bone sarcomas using intraoperative patient specific instruments- the next step in limb salvage concept
Publication Type: Academic Journal
Source(s): BMC Musculoskeletal Disorders, Vol 23, Iss 1, Pp 1-9 (2022)
Abstract: Abstract Background During pelvic Sarcoma resections, Surgeons often struggle to obtain negative margins while minimizing collateral damage and maintaining limb function. These complications are usually due to the complex anatomy of the pelvis. Here we...
Promising results in a 3-year follow-up for adults undergoing a one-stage surgery for residual talipes equinovarus as part of a humanitarian mission in Vietnam
Publication Type: Academic Journal
Source(s): Journal of Orthopaedic Surgery and Research, Vol 17, Iss 1, Pp 1-8 (2022)
Abstract: Abstract Background Rigid talipes equinovarus (TEV) is a complex foot deformity in which the foot is fixed in a plantarflexed, inverted, and adducted position. This pathology has the potential to severely limit basic life activities, which can be devas...
Developing and validating a machine learning prognostic model for alerting to imminent deterioration of hospitalized patients with COVID-19
Publication Type: Academic Journal
Source(s): Scientific Reports, Vol 12, Iss 1, Pp 1-10 (2022)
Abstract: Abstract Our study was aimed at developing and validating a new approach, embodied in a machine learning-based model, for sequentially monitoring hospitalized COVID-19 patients and directing professional attention to patients whose deterioration is imm...