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Identification of tumor-related genes via RNA sequencing of tumor tissues in Xenopus tropicalis.
Publication Type: Academic Journal
Source(s): Scientific reports [Sci Rep] 2023 Aug 14; Vol. 13 (1), pp. 13214. Date of Electronic Publication: 2023 Aug 14.
Abstract: Cancer treatment is still challenging because the disease is often caused by multiple mutations. Although genomic studies have identified many oncogenes and tumor suppressor genes, gene sets involved in tumorigenesis remain poorly understood. Xenopus, ...
Genome-wide identification and expression pattern profiling of the ATP-binding cassette gene family in tea plant (Camelliasinensis).
Publication Type: Academic Journal
Source(s): Plant physiology and biochemistry : PPB [Plant Physiol Biochem] 2023 Sep; Vol. 202, pp. 107930. Date of Electronic Publication: 2023 Aug 05.
Abstract: The ATP-binding cassette (ABC) gene family is one of the largest and oldest protein families, consisting of ATP-driven transporters facilitating substrate transportation across cell membranes. However, little is known about the evolution and biological...
nASAP: A Nascent RNA Profiling Data Analysis Platform.
Publication Type: Academic Journal
Source(s): Journal of molecular biology [J Mol Biol] 2023 Jul 15; Vol. 435 (14), pp. 168142. Date of Electronic Publication: 2023 May 05.
Abstract: Although nascent RNA profiling data are widely used in transcriptional regulation studies, the development and standardization of data processing pipeline lags far behind RNA-seq. We are filling this gap by establishing the nASAP web server (https://gr...
Transcriptome Dynamics during Spike Differentiation of Wheat Reveal Amazing Changes in Cell Wall Metabolic Regulators.
Publication Type: Academic Journal
Source(s): International journal of molecular sciences [Int J Mol Sci] 2023 Jul 19; Vol. 24 (14). Date of Electronic Publication: 2023 Jul 19.
Abstract: Coordinated cell proliferation and differentiation result in the complex structure of the inflorescence in wheat. It exhibits unique differentiation patterns and structural changes at different stages, which have attracted the attention of botanists st...
Isoflurane Anesthesia's Impact on Gene Expression Patterns of Rat Brains in an Ischemic Stroke Model.
Publication Type: Academic Journal
Source(s): Genes [Genes (Basel)] 2023 Jul 14; Vol. 14 (7). Date of Electronic Publication: 2023 Jul 14.
Abstract: Background: Ischemic stroke (IS) is one of the most severe brain diseases. Animal models with anesthesia are actively used to study stroke genomics and pathogenesis. However, the anesthesia-related gene expression patterns of ischemic rat brains remain...
The Pitaya Flower Tissue's Gene Differential Expression Analysis between Self-Incompatible and Self-Compatible Varieties for the Identification of Genes Involved in Self-Incompatibility Regulation.
Publication Type: Academic Journal
Source(s): International journal of molecular sciences [Int J Mol Sci] 2023 Jul 13; Vol. 24 (14). Date of Electronic Publication: 2023 Jul 13.
Abstract: Self-incompatible pitaya varieties have low fruit-setting rates under natural conditions, leading to higher production costs and hindering industrial prosperity. Through transcriptome sequencing, we obtained the 36,900 longest transcripts (including 91...
Robustness of single-cell RNA-seq for identifying differentially expressed genes.
Publication Type: Academic Journal
Source(s): BMC genomics [BMC Genomics] 2023 Jul 03; Vol. 24 (1), pp. 371. Date of Electronic Publication: 2023 Jul 03.
Abstract: Background: A common feature of single-cell RNA-seq (scRNA-seq) data is that the number of cells in a cell cluster may vary widely, ranging from a few dozen to several thousand. It is not clear whether scRNA-seq data from a small number of cells allow ...
Single-cell RNA sequencing of murine hearts for studying the development of the cardiac conduction system.
Publication Type: Academic Journal
Source(s): Scientific data [Sci Data] 2023 Sep 04; Vol. 10 (1), pp. 577. Date of Electronic Publication: 2023 Sep 04.
Abstract: The development of the cardiac conduction system (CCS) is essential for correct heart function. However, critical details on the cell types populating the CCS in the mammalian heart during the development remain to be resolved. Using single-cell RNA se...
Selection and validation of reference genes for RT-qPCR gene expression studies in Candida viswanathii cultivated under different grown conditions.
Publication Type: Academic Journal
Source(s): Journal of microbiological methods [J Microbiol Methods] 2023 Aug; Vol. 211, pp. 106777. Date of Electronic Publication: 2023 Jul 05.
Abstract: The properties presented by Candida viswanathii's lipases turn this specie into a promising producer of potentially applicable lipases in several industrial sectors, such as: food, textiles, in the oleochemical and paper industries, and also in differe...
[Identification and expression analysis of MADS -box gene family in Docynia delavayi (Franch.) Schneid.]
Publication Type: Academic Journal
Source(s): Sheng wu gong cheng xue bao = Chinese journal of biotechnology [Sheng Wu Gong Cheng Xue Bao] 2023 Jul 25; Vol. 39 (7), pp. 2897-2913.
Abstract: MADS -box gene family is a significant transcription factor family that plays a crucial role in regulating plant growth, development, signal transduction, and other processes. In order to study the characteristics of MADS -box gene family in Docynia de...