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Deep learning-enabled natural language processing to identify directional pharmacokinetic drug-drug interactions.
Publication Type: Academic Journal
Source(s): BMC bioinformatics [BMC Bioinformatics] 2023 Nov 01; Vol. 24 (1), pp. 413. Date of Electronic Publication: 2023 Nov 01.
Abstract: Background: During drug development, it is essential to gather information about the change of clinical exposure of a drug (object) due to the pharmacokinetic (PK) drug-drug interactions (DDIs) with another drug (precipitant). While many natural langua...
Extracting cancer concepts from clinical notes using natural language processing: a systematic review.
Publication Type: Academic Journal
Source(s): BMC bioinformatics [BMC Bioinformatics] 2023 Oct 29; Vol. 24 (1), pp. 405. Date of Electronic Publication: 2023 Oct 29.
Abstract: Background: Extracting information from free texts using natural language processing (NLP) can save time and reduce the hassle of manually extracting large quantities of data from incredibly complex clinical notes of cancer patients. This study aimed t...
Negation recognition in clinical natural language processing using a combination of the NegEx algorithm and a convolutional neural network.
Publication Type: Academic Journal
Source(s): BMC medical informatics and decision making [BMC Med Inform Decis Mak] 2023 Oct 13; Vol. 23 (1), pp. 216. Date of Electronic Publication: 2023 Oct 13.
Abstract: Background: Important clinical information of patients is present in unstructured free-text fields of Electronic Health Records (EHRs). While this information can be extracted using clinical Natural Language Processing (cNLP), the recognition of negati...
A weakly supervised method for named entity recognition of Chinese electronic medical records.
Publication Type: Academic Journal
Source(s): Medical & biological engineering & computing [Med Biol Eng Comput] 2023 Oct; Vol. 61 (10), pp. 2733-2743. Date of Electronic Publication: 2023 Jul 15.
Abstract: The field of Chinese medical natural language processing faces a significant challenge in training accurate entity recognition models due to the limited availability of high-quality labeled data. In response, we propose a joint training model, MCBERT-G...
Application of Natural Language Processing in Total Joint Arthroplasty: Opportunities and Challenges.
Publication Type: Academic Journal
Source(s): The Journal of arthroplasty [J Arthroplasty] 2023 Oct; Vol. 38 (10), pp. 1948-1953. Date of Electronic Publication: 2023 Aug 22.
Abstract: Total joint arthroplasty is becoming one of the most common surgeries within the United States, creating an abundance of analyzable data to improve patient experience and outcomes. Unfortunately, a large majority of this data is concealed in electronic...
Machine translation of standardised medical terminology using natural language processing: A scoping review.
Publication Type: Academic Journal
Source(s): New biotechnology [N Biotechnol] 2023 Nov 25; Vol. 77, pp. 120-129. Date of Electronic Publication: 2023 Aug 29.
Abstract: Standardised medical terminologies are used to ensure accurate and consistent communication of information and to facilitate data exchange. Currently, many terminologies are only available in English, which hinders international research and automated ...
A manually annotated corpus in French for the study of urbanization and the natural risk prevention.
Publication Type: Academic Journal
Source(s): Scientific data [Sci Data] 2023 Nov 22; Vol. 10 (1), pp. 818. Date of Electronic Publication: 2023 Nov 22.
Abstract: Land artificialization is a serious problem of civilization. Urban planning and natural risk management are aimed to improve it. In France, these practices operate the Local Land Plans (PLU - Plan Local d'Urbanisme) and the Natural risk prevention plan...
Does the first letter of one's name affect life decisions? A natural language processing examination of nominative determinism.
Publication Type: Academic Journal
Source(s): Journal of personality and social psychology [J Pers Soc Psychol] 2023 Nov; Vol. 125 (5), pp. 943-968. Date of Electronic Publication: 2023 May 25.
Abstract: This research examines whether the phenomenon of nominative determinism (a name-driven outcome) exists in the real world. Nominative determinism manifests as a preference for a profession or city to live in that begins with the same letter as a person'...
Localizing in-domain adaptation of transformer-based biomedical language models.
Publication Type: Academic Journal
Source(s): Journal of biomedical informatics [J Biomed Inform] 2023 Aug; Vol. 144, pp. 104431. Date of Electronic Publication: 2023 Jun 28.
Abstract: In the era of digital healthcare, the huge volumes of textual information generated every day in hospitals constitute an essential but underused asset that could be exploited with task-specific, fine-tuned biomedical language representation models, imp...
Contextualized medication event extraction with striding NER and multi-turn QA.
Publication Type: Academic Journal
Source(s): Journal of biomedical informatics [J Biomed Inform] 2023 Aug; Vol. 144, pp. 104416. Date of Electronic Publication: 2023 Jun 13.
Abstract: This paper describes contextualized medication event extraction for automatically identifying medication change events with their contexts from clinical notes. The striding named entity recognition (NER) model extracts medication name spans from an inp...