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A comparative cytogenetic study of Hypsibarbus malcolmi and H. wetmorei (Cyprinidae, Poropuntiini)
Publication Type: Academic Journal
Source(s): Comparative Cytogenetics, Vol 17, Iss , Pp 181-194 (2023)
Abstract: Cyprininae are a highly diversified but demonstrably monophyletic lineage of cypriniform fishes. Here, the karyotype and chromosomal characteristics of Hypsibarbus malcolmi (Smith, 1945) and H. wetmorei (Smith, 1931) were examined using conventional, n...
Analysis of polygenic selection in purebred and crossbred pig genomes using generation proxy selection mapping
Publication Type: Academic Journal
Source(s): Genetics Selection Evolution, Vol 55, Iss 1, Pp 1-21 (2023)
Abstract: Abstract Background Artificial selection on quantitative traits using breeding values and selection indices in commercial livestock breeding populations causes changes in allele frequency over time at hundreds or thousands of causal loci and the surrou...
Constructing phylogenetic networks via cherry picking and machine learning
Publication Type: Academic Journal
Source(s): Algorithms for Molecular Biology, Vol 18, Iss 1, Pp 1-28 (2023)
Abstract: Abstract Background Combining a set of phylogenetic trees into a single phylogenetic network that explains all of them is a fundamental challenge in evolutionary studies. Existing methods are computationally expensive and can either handle only small n...
Human NCR3 gene variants rs2736191 and rs11575837 alter longitudinal risk for development of pediatric malaria episodes and severe malarial anemia
Publication Type: Academic Journal
Source(s): BMC Genomics, Vol 24, Iss 1, Pp 1-11 (2023)
Abstract: Abstract Background Plasmodium falciparum malaria is a leading cause of pediatric morbidity and mortality in holoendemic transmission areas. Severe malarial anemia [SMA, hemoglobin (Hb) G and rs11575837:C > T) and their haplotypes. The prospective obse...
Genome-wide analysis of the P450 gene family in tea plant (Camellia sinensis) reveals functional diversity in abiotic stress
Publication Type: Academic Journal
Source(s): BMC Genomics, Vol 24, Iss 1, Pp 1-23 (2023)
Abstract: Abstract Background Cytochrome P450 (Cytochrome P450s) genes are involved in the catalysis of various reactions, including growth, development, and secondary metabolite biosynthetic pathways. However, little is known about the characteristics and funct...
Genome-wide analysis of the AP2/ERF gene family in Tritipyrum and the response of TtERF_B2-50 in salt-tolerance
Publication Type: Academic Journal
Source(s): BMC Genomics, Vol 24, Iss 1, Pp 1-15 (2023)
Abstract: Abstract The AP2/ERF transcription factor is widely distributed across the plant kingdom and plays a crucial role in various abiotic stress responses in plants. Tritipyrum, an octoploid resulting from an intergeneric cross between Triticum aestivum (AA...
Whole-genome resequencing reveals genetic diversity and selection signals in warm temperate and subtropical Sillago sinica populations
Publication Type: Academic Journal
Source(s): BMC Genomics, Vol 24, Iss 1, Pp 1-16 (2023)
Abstract: Abstract Background Genetic diversity and heterogeneous genomic signatures in marine fish populations may result from selection pressures driven by the strong effects of environmental change. Nearshore fishes are often exposed to complex environments a...
miR-128-3p inhibits intramuscular adipocytes differentiation in chickens by downregulating FDPS
Publication Type: Academic Journal
Source(s): BMC Genomics, Vol 24, Iss 1, Pp 1-12 (2023)
Abstract: Abstract Background Intramuscular fat (IMF) content is the major indicator for evaluating chicken meat quality due to its positive correlation with tenderness, juiciness, and flavor. An increasing number of studies are focusing on the functions of micr...
Codon usage pattern of the ancestor of green plants revealed through Rhodophyta
Publication Type: Academic Journal
Source(s): BMC Genomics, Vol 24, Iss 1, Pp 1-12 (2023)
Abstract: Abstract Rhodophyta are among the closest known relatives of green plants. Studying the codons of their genomes can help us understand the codon usage pattern and characteristics of the ancestor of green plants. By studying the codon usage pattern of a...
Identification and analysis of RNA-5-methylcytosine-related key genes in osteoarthritis
Publication Type: Academic Journal
Source(s): BMC Genomics, Vol 24, Iss 1, Pp 1-13 (2023)
Abstract: Abstract Background 5-methylcytosine (m5C) modification is widely associated with many biological and pathological processes. However, knowledge of m5C modification in osteoarthritis (OA) remains lacking. Thus, our study aimed to identify common m5C fe...