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Quasi-species nature and differential gene expression of severe acute respiratory syndrome coronavirus 2 and phylogenetic analysis of a novel Iranian strain.
Publication Type: Academic Journal
Source(s): Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2020 Nov; Vol. 85, pp. 104556. Date of Electronic Publication: 2020 Sep 13.
Abstract: A novel coronavirus related to severe acute respiratory syndrome virus, (SARS-CoV-2) is the causal agent of the COVID-19 pandemic. Despite the genetic mutations across the SARS-CoV-2 genome being recently investigated, its transcriptomic genetic polymo...
Taking Water into Account with the Fragment Molecular Orbital Method.
Publication Type: Academic Journal
Source(s): Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2020; Vol. 2114, pp. 105-122.
Abstract: This chapter describes the current status of development of the fragment molecular orbital (FMO) method for analyzing the electronic state and intermolecular interactions of biomolecular systems in solvent. The orbital energies and the inter-fragment i...
Water diversion in Brazil threatens biodiversity.
Publication Type: Academic Journal
Source(s): Ambio [Ambio] 2020 Jan; Vol. 49 (1), pp. 165-172. Date of Electronic Publication: 2019 Apr 27.
Abstract: Construction of water diversions is a common response to the increasing demands for freshwater, often resulting in benefits to communities but with the risk of multiple environmental, economic, and social impacts. Water-diversion projects can favor mas...
Comment on "Explaining virtual water trade: A spatial-temporal analysis of the comparative advantage of land, labor and water in China," published by Zhao et al. [Water Research (2019) 153: 304-314].
Publication Type: Academic Journal
Source(s): Water research [Water Res] 2019 Jul 01; Vol. 158, pp. 157-158. Date of Electronic Publication: 2019 Apr 20.
Abstract: The virtual water hypothesis offers the reasonable proposition that if water-abundant regions export water-intensive products to water-scarce regions, the latter could devote their scarce resources instead to uses yielding higher economic returns. Zhao...
Testing for differentially expressed genetic pathways with single-subject N-of-1 data in the presence of inter-gene correlation.
Publication Type: Academic Journal
Source(s): Statistical methods in medical research [Stat Methods Med Res] 2018 Dec; Vol. 27 (12), pp. 3797-3813. Date of Electronic Publication: 2017 May 29.
Abstract: Modern precision medicine increasingly relies on molecular data analytics, wherein development of interpretable single-subject ("N-of-1") signals is a challenging goal. A previously developed global framework, N-of-1- pathways, employs single-subject g...
Effects of γ-Valerolactone/H 2 O Solvent on the Degradation of pubescens for Its Fullest Utilization.
Publication Type: Academic Journal
Source(s): Journal of agricultural and food chemistry [J Agric Food Chem] 2018 Jun 20; Vol. 66 (24), pp. 6094-6103. Date of Electronic Publication: 2018 Jun 06.
Abstract: Solvent-thermal conversion of biomass was promising for obtaining value-added chemicals. However, little was known about the interactions between solvents and biomass in the process, which hindered the effective utilization of biomass. The effects of γ...
[Effects of water level fluctuation on the inter- and intra-specific relationships between Wedelia trilobata and W. chinensis].
Publication Type: Academic Journal
Source(s): Ying yong sheng tai xue bao = The journal of applied ecology [Ying Yong Sheng Tai Xue Bao] 2017 Mar 18; Vol. 28 (3), pp. 797-804.
Abstract: A controlled greenhouse experiment was designed with the invasive Wedelia trilobata and native W. chinensis. Three water level fluctuation treatments (no fluctuation, change pattern by 15 cm-0 cm-15 cm, change pattern by 0 cm-15 cm-0 cm) were crossed w...
Inter-laboratory study of human in vitro toxicogenomics-based tests as alternative methods for evaluating chemical carcinogenicity: a bioinformatics perspective.
Publication Type: Academic Journal
Source(s): Archives of toxicology [Arch Toxicol] 2016 Sep; Vol. 90 (9), pp. 2215-2229. Date of Electronic Publication: 2015 Nov 02.
Abstract: The assessment of the carcinogenic potential of chemicals with alternative, human-based in vitro systems has become a major goal of toxicogenomics. The central read-out of these assays is the transcriptome, and while many studies exist that explored th...
NMR chemical shift analysis of the conformational transition between the monomer and tetramer of melittin in an aqueous solution.
Publication Type: Academic Journal
Source(s): European biophysics journal : EBJ [Eur Biophys J] 2016 May; Vol. 45 (4), pp. 347-54. Date of Electronic Publication: 2015 Dec 11.
Abstract: It is known that melittin in an aqueous solution undergoes a conformational transition between the monomer and tetramer by variation in temperature. The transition correlates closely with isomers of the proline residue; monomeric melittin including a t...
Variations in nitrogen use efficiency reflect the biochemical subtype while variations in water use efficiency reflect the evolutionary lineage of C4 grasses at inter-glacial CO2.
Publication Type: Academic Journal
Source(s): Plant, cell & environment [Plant Cell Environ] 2016 Mar; Vol. 39 (3), pp. 514-26. Date of Electronic Publication: 2015 Dec 21.
Abstract: C4 photosynthesis evolved multiple times in diverse lineages. Most physiological studies comparing C4 plants were not conducted at the low atmospheric CO2 prevailing during their evolution. Here, 24 C4 grasses belonging to three biochemical subtypes [n...